Commuters were told to expect delays up to an hour after a train was towed at South Brisbane Station on Friday morning.
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TransLink warned that people travelling outbound on the Cleveland line could endure 60-minute delays from 9am on Friday.
A Queensland Rail spokeswoman said the train had suffered a "rollingstock fault" and was towed to the main yard for testing.
She said it was not yet clear what caused the fault or if it was engine-related.